rs28028806 SNP Detail

Summary

• ID
  rs28028806
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:84219162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGGGATT AAAGGCGTGC
  GCCACCACCG CCCGGCATGT ATGAATATTT AACCGAACAA ACTGTCTCGG CCTTTCGTAA
  AGTAAACGTT GTGGTTGTGG GCCCCTGAAG ATAGTGGAAT GTAAGACATT CAAGAGTAAA
  TGGAGAGGAG AGTTGTGTCT GAGTCATTTG TTTCTAATCA AATGCCTTGG CTGTGTGCGC
  K
  TGACGCAGCT GCTTTTCCTT TTTCTTTGTC TTTTTTTTTT TTTTTTTTTT TTTTAGATAT
  TTTCTTTATT TACATTTCAA GTGTTATCCC CTTTCCTGGT TTCCCCTCCG AAAGCCCCAA
  ACCCGTACCC CCTACCCCCT ACCCCTGCTC ACCAAACCAC CCACTCCTGC TTCCTGGCCC
  TCGCACTCCC CTATACTGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38173932	NES09252040	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28028806					SNP	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38173932	NES09252040	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84219162 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Calcrl	calcitonin receptor-like			Intron
				Noncoding-Transcript-Variant
Gm74802	predicted gene, 74802			within coordinates
Rr560245	regulatory region 560245			1242 bp distal
Rr560246	regulatory region 560246			906 bp distal
Rr560247	regulatory region 560247			426 bp distal
Tssr24971	transcription start site region 24971			1626 bp upstream
Tssr24972	transcription start site region 24972			880 bp downstream
Tssr24973	transcription start site region 24973			937 bp downstream
Tssr24974	transcription start site region 24974			978 bp downstream
Tssr24975	transcription start site region 24975			1978 bp downstream