rs28025796 SNP Detail

Summary

• ID
  rs28025796
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:60693682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGTGCCAA GCCCATCTTT CCCAGGCCTC TCTCTAAATA
  TGCCACAGCC AGTTCTAATA TTAAAAGTGA CCTATACACA GTGCTGGTCC AGTCTCCCAC
  Y
  TCCTACTCTC AAGCTCCTTT GCACAAGCAC ATTAAAAACA GAGTGGAACA AATCACACTG
  AGTTCAAGTG GCAAAATATG AGAGGCGGGT GGGGGTGGGG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38159916	NES09312236	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28025796					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38159916	NES09312236	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60693682 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm74809	predicted gene, 74809			253 bp upstream
Rbms1	RNA binding motif, single stranded interacting protein 1			Intron
				Noncoding-Transcript-Variant
Rr557722	regulatory region 557722			within coordinates
Rr557723	regulatory region 557723			264 bp proximal
Rr557724	regulatory region 557724			582 bp proximal
Rr557725	regulatory region 557725			1695 bp proximal