rs28025788 SNP Detail

Summary

• ID
  rs28025788
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:60694737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGAATCT CTGCTTCTTG
  CTCTATCTTT CCCACAAGAC TCCTGGATCC CAACACACAC ACACACACAC ACACACACAC
  ACTAGGGAAT TACGTAAAAA TGTACAGGGC AAAATAAGGT GTCGAGAAAG AAAACAAGGA
  AACAGAAGTC ATTCCCCATC CTGGGTCTCT GAGTTTCAGC TGGGTCCTGG AATCACAGTG
  S
  CCCTGAAGCT TCTGCCGGCT CAGCACCAAT GCAGACTCTC CCGAAGCCCT TTCCTGCAGA
  CACTCACTCG CAGGTCTCTA GGAGATGAGT TTAGCTCTGC CAGGGCTCAG GCTAATGAGG
  GTTCCAAGGA ACTTTCTTAC ATCAGCTTTA AGTGAAGAGT CCCTGTTTTT CTTTAGAGTC
  AATTCTGACT CACTTGCTCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38159908	NES09312251	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28025788					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38159908	NES09312251	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60694737 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm74809	predicted gene, 74809			within coordinates
Rbms1	RNA binding motif, single stranded interacting protein 1			Intron
				Noncoding-Transcript-Variant
Rr557722	regulatory region 557722			792 bp distal
Rr557723	regulatory region 557723			691 bp distal
Rr557724	regulatory region 557724			221 bp distal
Rr557725	regulatory region 557725			640 bp proximal