rs28025674 SNP Detail

Summary

• ID
  rs28025674
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:60734095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAACGCAA TCTAAAAATG
  ATCAGAGAGG GGAAACCCTT CAAAATAAGA TCGCCACATG CAAGAGTGAA CACTGTTCTA
  GAACAGGAAA TCATTTGGTT AGAAACACTG ACCCTGCTTG ACGGTTCCCA TTGGGTGCTG
  TTTACAAGAA ATCTCCCCAG CAGGGCACCT GCGTCCAGTT TCCCAATCCT GTGGTTTGCT
  Y
  ACGCTACAGG GCTGTGTTCC CGGCAAGTTC AAACCGTTAA GTTGAATTTC ATTCTTGTCT
  GGGAGTAACT TTTACTCAAT TGACTGCAGC TGTGTGCACA GAATACTGTT CCAAGAAACA
  TGTCTATGAG AAGACCATTT TAAGAAATGC AAATTAACTT CCATTATTTC AAGTCTGTAC
  AACTAGTGTA GGGACGGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38159794	NES09310863	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28025674					SNP	T	T	T	T	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38159794	NES09310863	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60734095 () rs orientation: forward

Symbol	Name	Function Class
6030432P03Rik	RIKEN cDNA 6030432P03 gene	1455 bp downstream
Gm74814	predicted gene, 74814	1887 bp upstream
Rbms1	RNA binding motif, single stranded interacting protein 1	Intron
Rr396989	regulatory region 396989	191 bp downstream
Rr557735	regulatory region 557735	1898 bp distal
Rr557736	regulatory region 557736	1606 bp distal
Rr557737	regulatory region 557737	600 bp distal
Rr557738	regulatory region 557738	within coordinates
Rr557739	regulatory region 557739	388 bp proximal
Rr557740	regulatory region 557740	1518 bp proximal
Tssr17890	transcription start site region 17890	1784 bp downstream
Tssr24237	transcription start site region 24237	984 bp upstream
Tssr24238	transcription start site region 24238	911 bp upstream
Tssr24239	transcription start site region 24239	1623 bp downstream