rs28025667 SNP Detail

Summary

• ID
  rs28025667
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:60736348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGAGCTG AGACAACAGA
  CATCTTCTGA TACACCAGGT TTTTGACACT GTTTGGTGCT GGAGACTAAA CTCAAGGCTT
  CACGTGGGCT AGGCAGATCC TCTCCCAACT GAACTCCATC AAGGCCCTCA AGCTTTCTTT
  AACTGAGAGG CACAAGCATC ACCAAGTACT CTCAGCTGTA AAGCAGAGTT AGGAAGTCTA
  R
  ACTAGTCTCC TATCTAGTTA GAGCCCACGT GGAACCGTGT CTTGCAAAAT GACAAACCAC
  ATAAAGAACC AAGGGACTCT TAGCCACAAA TGGACAGCTC ATGGAAGTGA GACCACTATG
  TTGTATCCAC CTGCATCCGT GACATAGCCA AAGTCACCTG GAACAGAAAA GCCACCAAGC
  TAATTCCATC CTACCTAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss38159787	NES09310767	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs28025667					SNP	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38159787	NES09310767	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60736348 () rs orientation: forward

Symbol	Name	Function Class
6030432P03Rik	RIKEN cDNA 6030432P03 gene	within coordinates
Rbms1	RNA binding motif, single stranded interacting protein 1	Intron
Rr557739	regulatory region 557739	1540 bp distal
Rr557740	regulatory region 557740	307 bp distal
Tssr24239	transcription start site region 24239	627 bp upstream