rs28018054 SNP Detail

Summary

• ID
  rs28018054
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:76160276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAACTTAGTG ATTTTTTTAA AAAAAAGTTT CTAATTCATT
  TTATTTCACC TTTTTGTAAT ACACTTTCTA TAAACTAGAA GAATCAATTG ATTGTTCAAA
  R
  TTTAAAAGAA TATCACAGAT GAGTCTGAGA TTTTCTCAGG TATGGATGTG TAAAGACTCA
  GTTTAGCTCC CAGCCTGGAT ACATTACAAA TACACACAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss38195674	NES09592136	PERLEGEN	MM_PANEL2	f	SNP			A	G	G	A		G	A	A	G	A	G
ss45581911	mCV23138992	ABI	CRAMUS_MOUSE	f	SNP	G	G					A	G
ss146582505	ENSMUSSNP5103826	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G						G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs28018054					SNP	G	G	A	G	G	A	A	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38195674	NES09592136	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:76160276 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptprd	protein tyrosine phosphatase receptor type D			Intron
				Noncoding-Transcript-Variant
Rr594077	regulatory region 594077			456 bp distal