rs28018048 SNP Detail

Summary

• ID
  rs28018048
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:76160911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATACTTCTGG GCTCTGAGAA CAGCAGCAAA GGAATGTGGC
  CAGAAGCCTC ACTTTTACCG GGAGCTGATG TGCCTTCATA CTAGACCTGA ATTTTCACAC
  R
  CATACATCCT GACGGAGCCT TGAAACTCTA GGGCTGAACT CCAAAACCCT TGCAGTTCTC
  ACCCTGGCAT CTATCTTTAT AAAGTTCTAT TCTCTGAGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38195668	NES09592148	PERLEGEN	MM_PANEL2	f	SNP		A	G	A	A	G		G	A	G	G	G	A	G	G
ss45613741	mCV23138994	ABI	CRAMUS_MOUSE	f	SNP	A	A					G		A
ss146582513	ENSMUSSNP2811909	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A							A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28018048					SNP	A	A	G	A	A	G	G	G	A	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38195668	NES09592148	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:76160911 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptprd	protein tyrosine phosphatase receptor type D			Intron
				Noncoding-Transcript-Variant
Rr594077	regulatory region 594077			1091 bp distal