rs28006817 SNP Detail

Summary

• ID
  rs28006817
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:62314927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGACAGCAT GAAACTCCAG TGATCATAAG TATGTTTCCT
  TCCCTGCTAT CATCTGTAAG CTAGGGGACT TTGGCCAAGC CACACATTCT CCGGGATTCT
  R
  ATGCTGATTT GTGAGGAGAG CAGTGGTTAA GCATTTGTTT AATATATGAC AAGACCACAG
  CGTTTCCCAC CTAAATCTGG ATGTCCAAAT GTATCAACTA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss38155539	NES09308802	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs28006817					SNP	A	A	A	A	A	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38155539	NES09308802	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:62314927 () rs orientation: forward

Symbol	Name	Function Class
Gcg	glucagon	933 bp upstream
Rr366692	regulatory region 366692	within coordinates
Rr557879	regulatory region 557879	682 bp proximal
Tssr24273	transcription start site region 24273	930 bp upstream