rs28005222 SNP Detail

Summary

• ID
  rs28005222
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:66085992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATTT GGATAAAATG AGGGATAAAA
  M
  ATGTAAAAGA GTTGGAGGAA AAACT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss38143056	NES09297027	PERLEGEN	MM_PANEL2	f	SNP	A	C	C	A	A	C	C	C		A	C	A		A
ss45234745	mCV27577165	ABI	CRAMUS_MOUSE	f	SNP	A	C
ss146716540	ENSMUSSNP6108591	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss320323719	CHEV_2_66093705	CHEVERUD	SCREENING_POP	f	SNP									A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs28005222					SNP	A	C	C	A	A	C	C	C	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38143056	NES09297027	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:66085992 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11703	CpG island 11703	586 bp proximal
Rr397014	regulatory region 397014	841 bp upstream
Rr558173	regulatory region 558173	110 bp proximal
Rr558174	regulatory region 558174	747 bp proximal
Rr558175	regulatory region 558175	934 bp proximal
Rr558176	regulatory region 558176	1407 bp proximal
Tssr24377	transcription start site region 24377	928 bp downstream
Ttc21b	tetratricopeptide repeat domain 21B	Intron