rs28005220 SNP Detail

Summary

• ID
  rs28005220
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:66086581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAATACTG AACAGGTCCC
  AAAGTGGACA GAGGGGAGGG GAGGGGATGC GAGGGGAGGG GAGGGGAATG ATCGCGAAAG
  GCTTCCAAAC CTTGTCCTTG TTTTTCACCA TTTCTGAAAT ATATGCTGAG TGCAACTATG
  GGAAGACCAT TTTCATAATC TATAATACTC CTCCTTTTAA AGGACTTTCG TTAACCGCTT
  R
  CAAAGGTGAG TGCCGGGTAG AGGACATTAG CTCGCTAAGT CCCTAGAAAT CACACTTGGA
  GACTAAGCAG GCTTTCCCAG GAGAAGTCCA AAGCCAACAT AAGCAGGAGG CTGGGGGCTG
  GCCGTTAACC GCAAGGCAGT GGTTGAGCCC TCGGGATCAT CCCGGCGGGG GGCGCAGCAT
  CTCCGCCAAG GCCGCAGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38143054	NES09296986	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28005220					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38143054	NES09296986	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:66086581 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11703	CpG island 11703	within coordinates
Rr397014	regulatory region 397014	252 bp upstream
Rr558173	regulatory region 558173	within coordinates
Rr558174	regulatory region 558174	158 bp proximal
Rr558175	regulatory region 558175	345 bp proximal
Rr558176	regulatory region 558176	818 bp proximal
Tssr24377	transcription start site region 24377	339 bp downstream
Ttc21b	tetratricopeptide repeat domain 21B	Intron