rs28005219 SNP Detail

Summary

• ID
  rs28005219
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:66087702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGTGCTTA TTAAACTGCT
  CCGCCAGATT TCCACCCCCA AAGTCTTATT TAAAAATATG TGGTTACCTC TTTTAGATTT
  CTATTTCTTA AGTGTTTGCT GTAGTTTGGA TCTAAACTGT CCCTCAAAGA CACACGTGCT
  GAATGTTCCC CAGCCCGTGT GCTGTTGGGA GTGGTGGAAC CTTTGATAGA TGAGGCCAAA
  Y
  GAAAGGACTT TAGAAGATTC TCACGTGACC TTGAAGAAGA CATTGGGACC ATGGACTTGC
  TGTTTGCTTT TCTTTTTGCT TTTCTGTTTG CTTCCTGGCA GCCTTCCTTA GAAGATCTTC
  ACCAGTGTAT TTATCATGAG ATCCAGCAAG CTGACTGAGA GGGGCATCTA GACACACTAA
  TTTGTTTCTG CTTGTATTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38143053	NES09296926	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28005219					SNP	T	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38143053	NES09296926	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:66087702 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11703	CpG island 11703	484 bp distal
Rr397014	regulatory region 397014	568 bp downstream
Rr558173	regulatory region 558173	777 bp distal
Rr558174	regulatory region 558174	942 bp distal
Rr558175	regulatory region 558175	251 bp distal
Rr558176	regulatory region 558176	282 bp distal
Tssr24377	transcription start site region 24377	713 bp upstream
Ttc21b	tetratricopeptide repeat domain 21B	741 bp upstream