rs28005218 SNP Detail

Summary

• ID
  rs28005218
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:66087748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCCCAGCCC GTGTGCTGTT GGGAGTGGTG GAACCTTTGA
  TAGATGAGGC CAAATGAAAG GACTTTAGAA GATTCTCACG TGACCTTGAA GAAGACATTG
  S
  GACCATGGAC TTGCTGTTTG CTTTTCTTTT TGCTTTTCTG TTTGCTTCCT GGCAGCCTTC
  CTTAGAAGAT CTTCACCAGT GTATTTATCA TGAGATCCAG                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38143052	NES09296927	PERLEGEN	MM_PANEL2	f	SNP	C	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28005218					SNP	C	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38143052	NES09296927	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:66087748 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11703	CpG island 11703	530 bp distal
Rr397014	regulatory region 397014	614 bp downstream
Rr558173	regulatory region 558173	823 bp distal
Rr558174	regulatory region 558174	988 bp distal
Rr558175	regulatory region 558175	297 bp distal
Rr558176	regulatory region 558176	328 bp distal
Tssr24377	transcription start site region 24377	759 bp upstream
Ttc21b	tetratricopeptide repeat domain 21B	787 bp upstream