rs28005217 SNP Detail

Summary

• ID
  rs28005217
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:66087883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGA GGGGCATCTA GACACACTAA
  Y
  TTGTTTCTGC TTGTATTCTT TAAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss38143051	NES09296928	PERLEGEN	MM_PANEL2	f	SNP			T	T	T	C		T	T	T	T		T	T	C		C
ss45249074	mCV27577154	ABI	CRAMUS_MOUSE	f	SNP	C	T	T				T		T
ss146716544	ENSMUSSNP2689992	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T
ss320323721	CHEV_2_66095596	CHEVERUD	SCREENING_POP	f	SNP												C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs28005217					SNP	C	T	T	T	T	C	T	T	T	T	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38143051	NES09296928	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:66087883 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11703	CpG island 11703	665 bp distal
Rr397014	regulatory region 397014	749 bp downstream
Rr558173	regulatory region 558173	958 bp distal
Rr558174	regulatory region 558174	1123 bp distal
Rr558175	regulatory region 558175	432 bp distal
Rr558176	regulatory region 558176	463 bp distal
Tssr24377	transcription start site region 24377	894 bp upstream
Ttc21b	tetratricopeptide repeat domain 21B	922 bp upstream