rs28005216 SNP Detail

Summary

• ID
  rs28005216
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:66087897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGACA CACTAATTTG TTTCTGCTTG
  K
  ATTCTTTAAA GGACTGCAGG CAGCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss38143050	NES09296929	PERLEGEN	MM_PANEL2	f	SNP			T	T	T	G		T	T	T	T		T	T	T
ss45244026	mCV27577153	ABI	CRAMUS_MOUSE	f	SNP	G	T	T				T		T
ss146716546	ENSMUSSNP6152769	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T
ss320323722	CHEV_2_66095610	CHEVERUD	SCREENING_POP	f	SNP												G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs28005216					SNP	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38143050	NES09296929	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:66087897 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11703	CpG island 11703	679 bp distal
Rr397014	regulatory region 397014	763 bp downstream
Rr558173	regulatory region 558173	972 bp distal
Rr558174	regulatory region 558174	1137 bp distal
Rr558175	regulatory region 558175	446 bp distal
Rr558176	regulatory region 558176	477 bp distal
Tssr24377	transcription start site region 24377	908 bp upstream
Ttc21b	tetratricopeptide repeat domain 21B	936 bp upstream