rs28005215 SNP Detail

Summary

• ID
  rs28005215
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:66088236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGGTCCT GTTTGGCTGT
  CATCTCTTAG AAGCCTACTT CTTTCTGAAG AGGAGAGGGA GGGGGAATGG ATCTAAAGGA
  ATGGAGAAGC GGATGTGGTG AAAAGCTAGG AAGAGTGGGG TGGGGGAACT GTGGTTGGGA
  TGAGAGAAGA ATCCATTTCA ATTAAAAAAA AACAGGCAGA ATGATGTAGA CAGTTCTAGA
  R
  TTCTATCTTA TCAAGAAGAG AGGTACTTAA GGTCATGACA AAGCAGTGGG GATGCTAATT
  ATTCCAATGT GACCCCTGCT CTTTGTATGT GTGCACTGAA ATATCGCACT GTATCCCAGT
  GAAAACCACC AGTTTCCACA TTTTTGAGCA TCATATAAGC CTTTTGAGTT TCAGTGGAGT
  CTTGGGACAG AAAGGGCCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss38143049	NES09296908	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs28005215					SNP	A	A	A	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38143049	NES09296908	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:66088236 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11703	CpG island 11703	1018 bp distal
Rr397014	regulatory region 397014	1102 bp downstream
Rr558173	regulatory region 558173	1311 bp distal
Rr558174	regulatory region 558174	1476 bp distal
Rr558175	regulatory region 558175	785 bp distal
Rr558176	regulatory region 558176	816 bp distal
Tssr24377	transcription start site region 24377	1247 bp upstream
Ttc21b	tetratricopeptide repeat domain 21B	1275 bp upstream