rs27991773 SNP Detail

Summary

• ID
  rs27991773
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:69758494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATATGACA TTTTTTGCAA
  TATCACTTAG TCTTTTCTTG TGTAGCTCAT CTGAAATAAG AGAAAATGTT ATTTATGTTA
  TATGGAACCA AAACTAAATT CAAGAACATA TCTTAATTTT GTGAAATATT TTAAAATTTA
  ATATACACCA ATTAAATTTG TGACTATCAG ATAATCTAGT TCAATAGAAA ACCATCATCA
  K
  TCTTATATGT GAGTGGGTCT AATTATAATT AGATATTTCT GAGAGGGAAG AGAATGTGTT
  GTAGGGTAGG GTATTTTGTT CTTTATAAGC AGGGTCTAGT TATATAACAC AGGCTGCTTC
  AAGTTTTTCA TCTTCCTGCA GTAGCCTATG GGATTGCAGG TGTGCACCAC CATTCCAGTG
  TACAGATAAC TTTTCAAGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38129096	NES09276122	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27991773					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38129096	NES09276122	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69758494 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr373314	regulatory region 373314			1211 bp downstream
Rr558496	regulatory region 558496			1777 bp proximal
Ubr3	ubiquitin protein ligase E3 component n-recognin 3			Intron
				Noncoding-Transcript-Variant