rs27991772 SNP Detail

Summary

• ID
  rs27991772
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:69758706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGGGTCTA ATTATAATTA
  GATATTTCTG AGAGGGAAGA GAATGTGTTG TAGGGTAGGG TATTTTGTTC TTTATAAGCA
  GGGTCTAGTT ATATAACACA GGCTGCTTCA AGTTTTTCAT CTTCCTGCAG TAGCCTATGG
  GATTGCAGGT GTGCACCACC ATTCCAGTGT ACAGATAACT TTTCAAGGAA ACTTTAGAAA
  R
  CTGAAGCCCA TAAGCACATG TCTACGTGTT CCATCACTAG ATTATTAGTT CCTGTGATTT
  TGAGGTGCAA ATGAAGTAAA ACTTTTCTCC GGTGAAGCTG TGACCATCTG ATGTTCATTT
  TAGAGAAACA GAAGAATGGG GAGAAAGAAA AAAAATGTTT CAGCCTGGTA TTGTGTTAAC
  TATTGTTATT AATTTTGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38129095	NES09276079	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27991772					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38129095	NES09276079	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69758706 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr373314	regulatory region 373314			1423 bp downstream
Rr558496	regulatory region 558496			1565 bp proximal
Ubr3	ubiquitin protein ligase E3 component n-recognin 3			Intron
				Noncoding-Transcript-Variant