rs27991767 SNP Detail

Summary

• ID
  rs27991767
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:69761816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCACACT ACTATTGAAT
  TATACACCAC ATCCATGTTT TCTTTTTGAA TGACTTTTTC TTCCTAATTC TACTTTTCCT
  TTAGGCCTGC AACTCAGGAA ATGGATAGAA CTTTATAACA CCTTGCTGAC ACTGTGTTAC
  TGAAAGTATC CCTTTTATAG GAAGTTTATA GCTGAAAAAC ATGATGTGCT TCTAACAAAG
  K
  GTCAGTTCAT TTAGAAGTTG TTGATTCCTT TGCAGTAGTA GTTCCTTGTT TCCCTTTCTT
  AGGCGCAGTG AATCACAACC TTTAGAGAGA AAAAAAATCC CTTAGTTCTG CGATGAGGGT
  GGCAGGAGCA TTTCGGGCTG TATTTTATTT GGAAACAGCT ACCTGCACCC AGGACTTCCC
  TTCCTTTCCT TTTCTTGTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38129090	NES09275940	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27991767					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38129090	NES09275940	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69761816 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr558496	regulatory region 558496			1524 bp distal
Tssr18186	transcription start site region 18186			936 bp downstream
Ubr3	ubiquitin protein ligase E3 component n-recognin 3			Intron
				Noncoding-Transcript-Variant