rs27991764 SNP Detail

Summary

• ID
  rs27991764
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:69761951 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTACTGAAA GTATCCCTTT
  TATAGGAAGT TTATAGCTGA AAAACATGAT GTGCTTCTAA CAAAGTGTCA GTTCATTTAG
  AAGTTGTTGA TTCCTTTGCA GTAGTAGTTC CTTGTTTCCC TTTCTTAGGC GCAGTGAATC
  ACAACCTTTA GAGAGAAAAA AAATCCCTTA GTTCTGCGAT GAGGGTGGCA GGAGCATTTC
  K
  GGCTGTATTT TATTTGGAAA CAGCTACCTG CACCCAGGAC TTCCCTTCCT TTCCTTTTCT
  TGTCTTTTCT CTTCTGCTCC CCTCTCCTTC CCTCCCTTTC TCTCTCCTCC GTATCTGGTT
  CTCACAGATC TCTTGGCCCC TGGGGTCTAC ACTGTCTGTG CTAACTAGCT TTCTCATTCT
  GTTGTACAGT CTCAGCATCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38129087	NES09275944	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27991764					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38129087	NES09275944	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69761951 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr558496	regulatory region 558496			1659 bp distal
Tssr18186	transcription start site region 18186			1071 bp downstream
Ubr3	ubiquitin protein ligase E3 component n-recognin 3			Intron
				Noncoding-Transcript-Variant