rs27989081 SNP Detail

Summary

• ID
  rs27989081
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69417254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGGAGGGAG GGAGGGAGGG AGGGAGGGAG GGAGGGAGGG
  AGGGAGGGAG GGAGGGAGGA CCAGAAAAAA GCTGGACAGA GCCAAGCCGC CTGACCTCCT
  K
  GCCTCGGTGT GAACTCGCTA AGCTGCCTCG GGGCCCTCCT CCCCCTGACA GGGTGCAGGC
  TACCCAGATG GGGTAGCTTG TGTTTTTATA GTCAGAGAGG                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38130111	NES09287802	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27989081					SNP	T	T	T	T	T	G	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38130111	NES09287802	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69417254 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11710	CpG island 11710	404 bp distal
Cpgi11711	CpG island 11711	1060 bp proximal
Lrp2	low density lipoprotein receptor-related protein 2	881 bp upstream
Rr558427	regulatory region 558427	892 bp distal
Rr558428	regulatory region 558428	355 bp distal
Rr558429	regulatory region 558429	169 bp proximal
Rr558430	regulatory region 558430	646 bp proximal
Tssr24442	transcription start site region 24442	873 bp upstream