rs27989080 SNP Detail

Summary

• ID
  rs27989080
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69417401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGAGGGA GGACCAGAAA
  AAAGCTGGAC AGAGCCAAGC CGCCTGACCT CCTTGCCTCG GTGTGAACTC GCTAAGCTGC
  CTCGGGGCCC TCCTCCCCCT GACAGGGTGC AGGCTACCCA GATGGGGTAG CTTGTGTTTT
  TATAGTCAGA GAGGAGATTC TATCATTGCT CTGGAGGCCA TAACTATCTG GCTCCCCAAG
  S
  GTCAGGTGTC AGTCATGCCA GACAGCGTCT CCTACAGTTC TGTTCATTTC GAAACAAAAC
  TTGGGGGAGG GGTTGTTTTC TCCGCAATGC CAATAATGAG AGAAACACCA GGAATTCGGG
  AGAACTCTAT GGTTCCCCTC GGGGACCACA CTGAACCTGT TAACTGGGAG ACAACCCTCT
  TTAAGAGAGT GGACCTTACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38130110	NES09287805	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27989080					SNP	C	C	C	C	C	C	C	C	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38130110	NES09287805	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69417401 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11710	CpG island 11710	551 bp distal
Cpgi11711	CpG island 11711	913 bp proximal
Lrp2	low density lipoprotein receptor-related protein 2	1028 bp upstream
Rr558427	regulatory region 558427	1039 bp distal
Rr558428	regulatory region 558428	502 bp distal
Rr558429	regulatory region 558429	22 bp proximal
Rr558430	regulatory region 558430	499 bp proximal
Tssr24442	transcription start site region 24442	1020 bp upstream