rs27985617 SNP Detail

Summary

• ID
  rs27985617
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72428013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACAGTCAA CATCTTTTAG
  ACACACCAGG CCAGATACAT TCCGAAACTA TAAATCTTCG AGCCATCCCG ACGATCTAAG
  CCATTTATGT GCTGTAATGA AAAACAAAAC AGCTTTGTGT TGCTCTCTCA TGTGAGTTTG
  GCATTCTCGG AGTTGCCTTG CTTAGGACAC TCAGCTCCAC TTATCTGTAG TTGCAGAAGC
  Y
  GCAAGCCTGT GATTGATCTT GTAACTCCAA TATCTCAAGA GATAAGCAGG GAAGCAAATT
  CCCCGGAGAG GGCTGACAAC AGTTTTTAAA ATGAAATGTG TATACACCAA GCCTGACAAA
  CTCTATTGCC CACCATCTTT GAAACCGTCA GTTTCCGGGG TGACATTTGA TTCCATGTGT
  TTGTTTTGGT GAGTGAGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38119251	NES09281658	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27985617					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38119251	NES09281658	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72428013 () rs orientation: forward

Symbol	Name	Function Class
Rr558998	regulatory region 558998	within coordinates
Tssr18356	transcription start site region 18356	121 bp downstream