rs27983462 SNP Detail

Summary

• ID
  rs27983462
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:71696077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTATG GGTCTGACTG TTGAGCAGGA
  R
  ACTGAGAGGC ACAACTGAAT CAGCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38122221	NES09278635	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	G	G	G	G		A	A	G	A		G
ss146751443	ENSMUSSNP3495809	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A					G
ss320340926	CHEV_2_71703790	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27983462					SNP	A	A	A	A	A	G	G	G	G	A	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38122221	NES09278635	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:71696077 () rs orientation: forward

Symbol	Name	Function Class
Gm74965	predicted gene, 74965	1142 bp downstream
Rr370575	regulatory region 370575	808 bp upstream
Rr558851	regulatory region 558851	1802 bp distal
Rr558852	regulatory region 558852	243 bp proximal
Rr558853	regulatory region 558853	667 bp proximal
Rr558854	regulatory region 558854	1809 bp proximal
Tssr18292	transcription start site region 18292	394 bp upstream
Tssr24499	transcription start site region 24499	1818 bp downstream