rs27983461 SNP Detail

Summary

• ID
  rs27983461
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:71696471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGG GGCATTTGTA GAGCTTCCCT
  K
  TCTAGTGTTA CCAGGAAACA GGAGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38122220	NES09278615	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	G	T	G	T	T	G	T	G
ss146751450	ENSMUSSNP430626	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27983461					SNP	T	T	T	T	T	G	T	G	T	G	T	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38122220	NES09278615	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:71696471 () rs orientation: forward

Symbol	Name	Function Class
Gm74965	predicted gene, 74965	748 bp downstream
Rr370575	regulatory region 370575	414 bp upstream
Rr558852	regulatory region 558852	within coordinates
Rr558853	regulatory region 558853	273 bp proximal
Rr558854	regulatory region 558854	1415 bp proximal
Tssr18292	transcription start site region 18292	within coordinates
Tssr18293	transcription start site region 18293	1627 bp upstream
Tssr24499	transcription start site region 24499	1424 bp downstream