rs27983460 SNP Detail

Summary

• ID
  rs27983460
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:71697149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAGCTTCT TAAGGACTAA
  AGGCTCATAG CCCTGGATGG TGGTGCAAAT CTTTAATCTC AGCAGAGGCA GGGTGCTCTC
  TGTGAGCTGT GTAGCTAGTT TCAGGTCAGC CAAGGTTAAC TAGAAAGAAA GTGTCTCTAA
  AACGAAAACA AAAGGACTGC ACCTGACAGG AACCAGCCCA TTTCCTGCCC TTTGTCCTCC
  W
  GTGTTCTCTT TAGCTTAAGG AAGTGGGTTC TTCCTTGTGA GCCTTACTGG GGCATGGGGG
  TTAGGTATCT TTTCCTCACT TCTTCAAAGT ACTTTTTCTA AACAAAGAAC AATGTTTCCA
  AAGCCAGGTG TTAAGTAGTC CTTGTTTTTA ATCACAGCAC TCTGGAGGCT GAAACAGGTG
  AATCTCTATG AGATTCTATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38122219	NES09278573	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27983460					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38122219	NES09278573	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:71697149 () rs orientation: forward

Symbol	Name	Function Class
Gm74965	predicted gene, 74965	70 bp downstream
Gm75575	predicted gene, 75575	1675 bp upstream
Rr370575	regulatory region 370575	within coordinates
Rr558852	regulatory region 558852	567 bp distal
Rr558853	regulatory region 558853	within coordinates
Rr558854	regulatory region 558854	737 bp proximal
Tssr18292	transcription start site region 18292	673 bp downstream
Tssr18293	transcription start site region 18293	949 bp upstream
Tssr18294	transcription start site region 18294	1702 bp upstream
Tssr18295	transcription start site region 18295	1709 bp upstream
Tssr24499	transcription start site region 24499	746 bp downstream
Tssr24500	transcription start site region 24500	1501 bp downstream