rs27983458 SNP Detail

Summary

• ID
  rs27983458
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:71698087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCA GAGGATAAAG TCAGAGGGCA
  Y
  TGGAGACCGG GTCAAACTTG TTTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38122217	NES09278525	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	T	C	T	C	T		C	C	T	C		T
ss146751467	ENSMUSSNP5299727	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T
ss320340937	CHEV_2_71705800	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27983458					SNP	T	C	C	C	C	T	C	T	C	T	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38122217	NES09278525	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:71698087 () rs orientation: forward

Symbol	Name	Function Class
Gm74965	predicted gene, 74965	191 bp upstream
Gm75575	predicted gene, 75575	737 bp upstream
Rr370575	regulatory region 370575	within coordinates
Rr558852	regulatory region 558852	1505 bp distal
Rr558853	regulatory region 558853	202 bp distal
Rr558854	regulatory region 558854	within coordinates
Tssr18292	transcription start site region 18292	1611 bp downstream
Tssr18293	transcription start site region 18293	11 bp upstream
Tssr18294	transcription start site region 18294	764 bp upstream
Tssr18295	transcription start site region 18295	771 bp upstream
Tssr24499	transcription start site region 24499	159 bp upstream
Tssr24500	transcription start site region 24500	563 bp downstream