rs27982756 SNP Detail

Summary

• ID
  rs27982756
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:74408069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATTT CTATATGAAC TCATACCTTT
  R
  TTAGAGTCAC CTATCCAAGC ATTCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38113081	NES09256884	PERLEGEN	MM_PANEL2	f	SNP	G			G	A		A	G	G	G	G
ss45286070	mCV25093500	ABI	CRAMUS_MOUSE	f	SNP		G	G			A
ss146763377	ENSMUSSNP6134785	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27982756					SNP	G	G	G	G	A	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38113081	NES09256884	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74408069 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930445N08Rik	RIKEN cDNA 4930445N08 gene			1319 bp upstream
Cpgi11782	CpG island 11782			393 bp proximal
Lnpk	lunapark, ER junction formation factor			Intron
				Noncoding-Transcript-Variant
Rr559317	regulatory region 559317			183 bp proximal
Rr559318	regulatory region 559318			488 bp proximal
Rr559319	regulatory region 559319			627 bp proximal
Rr559320	regulatory region 559320			1213 bp proximal
Rr559321	regulatory region 559321			1330 bp proximal
Tssr18388	transcription start site region 18388			1314 bp upstream
Tssr24609	transcription start site region 24609			1118 bp upstream
Tssr24610	transcription start site region 24610			1150 bp downstream
Tssr24611	transcription start site region 24611			1682 bp downstream
Tssr24612	transcription start site region 24612			1695 bp downstream
Tssr24613	transcription start site region 24613			1736 bp downstream