rs27982645 SNP Detail

Summary

• ID
  rs27982645
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:73864121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACACTATGG GTTATTGGGT
  AAATAAATAC TAGGTTTTAA AGGTAAGGAT GAGCTGGTTA TTCTGAATAC AGAAAGGCAA
  GAACAGAACG CAGGAGATCT CAGTCTTAAG GCAGGGATCT GGAGGCACCT CATGCTGAGT
  AGACAGCTGT GAGTTGGGTA AGTTTGATAT TTTTATGTGG TATTATGGAA TATGTTACCT
  Y
  GAAGGCTAAC TCAGAGATGA GAACCCCAGG AGGGAAGTGT TGGCGTCCCG TTGGGAACAG
  TGGGCGTTTT CCAAGCTTGG TTTGACTGAG ATGCTGTTTA GAATTTTCAC CTCACCAGAG
  AACATTGACC TCTGCTCTGG TTGGCTCATG ATTTTCGAGT GGCGCCTCCC CAAATCCAGC
  CCAGCACTGT GTGGCTCATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38115277	NES09278052	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27982645					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38115277	NES09278052	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73864121 () rs orientation: forward

Symbol	Name	Function Class
Gm75206	predicted gene, 75206	within coordinates
Rr373361	regulatory region 373361	1157 bp downstream
Rr559274	regulatory region 559274	754 bp distal