rs27982440 SNP Detail

Summary

• ID
  rs27982440
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:73926738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTACACACT GTCTTTTGAA
  GTGACTGATC TGTTATCAGG TCTGAGCAGG TCTCACCTGT CCCACCCTCA TTTGTCCATG
  GCTTTACCTC AGGACATGAG CAGTGAGTGT CAGGCGAGCA TAGGAAGGAC ATGGACCTTC
  TAAGAAGGCA GTTCATTAGT GACTGTGTTC GCATTCTCAT GATTTTGTTT TTCTTTTCCA
  S
  ACTTAGGCCA CCAGAGACTT TAGCTCATTA ATGTTTGGTT AATGGGCAAC TGTTCTTAAT
  TTCTTGCTGT ATATCTGGCT TCAAGACTCT CATGTCAAAG GGAAAAGAGC TATTAATTCC
  CCTTTACAAA CATATACACT AAGAAAACAA AGCTCCAAAT ATGACATGAA GAGATGCAAA
  ACCTCTTTCC CTTTTCTGCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38115071	NES09271956	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27982440					SNP	C	C	C	C	C	C	C	C	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38115071	NES09271956	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73926738 () rs orientation: forward

Symbol	Name	Function Class
Rr559280	regulatory region 559280	214 bp proximal