rs27982438 SNP Detail

Summary

• ID
  rs27982438
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:73928762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCTTTCT CTCTTCCTTC
  CTTCCTTCCT TCTTTCCCTC ACAGAGTGAA TGGTCCAGTA GGGAATACAG ATTAGTAGAT
  GAGCACTATT AATCTATTAA TAAGTGGGTC CTCTGATGAG GTACATTTAG CATGCAGTGT
  GAGTACACGG GGAAGGCTCA CAGATGTGAC GAGGCAGGTT AGCTGGGATT TAAAATAAGG
  Y
  TAGTAATGAG CAGTGGAGTC TTGGGGAAGG GATTCCAGTG TGGTGTGTTG GAGGAAGCAA
  GTGAATTTCA ATATGACTAA TCTACGAAAT GCAAGGGCAT GAGGATAATA AATGTCTGGT
  GCTGAAGGAG GAGGAGCTTG TCAGTAGCGG GGAGGGGGCG ATAAGATGTA TGTAAATTAC
  ATCCTATAAA AATTTGCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38115069	NES09271905	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27982438					SNP	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38115069	NES09271905	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73928762 () rs orientation: forward

Symbol	Name	Function Class
Rr559280	regulatory region 559280	1116 bp distal
Rr559281	regulatory region 559281	1610 bp proximal