rs27982435 SNP Detail

Summary

• ID
  rs27982435
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:73929152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTTGCTG ATGTTTGAGG
  ACAGGGAATG GCACAGACAA GTATGTATGT TTAAAAAGGT CACTCTGGAT TCTTCTATCG
  AGCATACTGG AAGGGGCAAT CCTTGAGGCA GACATAGCAG TTAAGCTTGG AAGAAGAATA
  GGAAGTATTC CCATTCCACT GGATAGGAAG TAGAAGCAAT GGGACTAGGG CTTTGGCAAG
  W
  TGTGTCTGTG TTTGCATCCA CATATGTGGG TGACTGTATG GGCAGTGGTT GTTTCAAGAG
  GGAAGGGGAA GTTGAGGAAG ACTCCAGGGC GAAGGAGCTA GAGCTGCTGG TTATTTCAGC
  TCCTAAGGGA GGAACACAGC AGGTTTAGAG AGCTTAGTGA GTAGCCTGCT TTTGAAGTTG
  ACTTTAAGGA ATTTTCAAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38115066	NES09271867	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27982435					SNP	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38115066	NES09271867	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73929152 () rs orientation: forward

Symbol	Name	Function Class
Rr559280	regulatory region 559280	1506 bp distal
Rr559281	regulatory region 559281	1220 bp proximal