rs27982433 SNP Detail

Summary

• ID
  rs27982433
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:73929273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGCTTGGA AGAAGAATAG
  GAAGTATTCC CATTCCACTG GATAGGAAGT AGAAGCAATG GGACTAGGGC TTTGGCAAGA
  TGTGTCTGTG TTTGCATCCA CATATGTGGG TGACTGTATG GGCAGTGGTT GTTTCAAGAG
  GGAAGGGGAA GTTGAGGAAG ACTCCAGGGC GAAGGAGCTA GAGCTGCTGG TTATTTCAGC
  Y
  CCTAAGGGAG GAACACAGCA GGTTTAGAGA GCTTAGTGAG TAGCCTGCTT TTGAAGTTGA
  CTTTAAGGAA TTTTCAAGTA GAAATACCCT GTCAGTAGGA AGTGTGAGTC ATAGAAGGAA
  GAGCCAGTCC CCACCATTGT CCTTTGTGTT TGCTTTTAGC TGTTTGGTTT CCCCACATTT
  CATCCACAGA GGCGGAGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38115064	NES09271869	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27982433					SNP	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38115064	NES09271869	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73929273 () rs orientation: forward

Symbol	Name	Function Class
A630050E04Rik	RIKEN cDNA A630050E04 gene	1993 bp downstream
Rr559280	regulatory region 559280	1627 bp distal
Rr559281	regulatory region 559281	1099 bp proximal