rs27982432 SNP Detail

Summary

• ID
  rs27982432
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:73929299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCATTCC ACTGGATAGG
  AAGTAGAAGC AATGGGACTA GGGCTTTGGC AAGATGTGTC TGTGTTTGCA TCCACATATG
  TGGGTGACTG TATGGGCAGT GGTTGTTTCA AGAGGGAAGG GGAAGTTGAG GAAGACTCCA
  GGGCGAAGGA GCTAGAGCTG CTGGTTATTT CAGCTCCTAA GGGAGGAACA CAGCAGGTTT
  R
  GAGAGCTTAG TGAGTAGCCT GCTTTTGAAG TTGACTTTAA GGAATTTTCA AGTAGAAATA
  CCCTGTCAGT AGGAAGTGTG AGTCATAGAA GGAAGAGCCA GTCCCCACCA TTGTCCTTTG
  TGTTTGCTTT TAGCTGTTTG GTTTCCCCAC ATTTCATCCA CAGAGGCGGA GATTAAAGTC
  AGTGCTCTGC TCAATAACGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38115063	NES09271870	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A		A	A	G		A
ss320346655	CHEV_2_73937012	CHEVERUD	SCREENING_POP	f	SNP								A				G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27982432					SNP	A	A	A	A	A	A	A	A	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38115063	NES09271870	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73929299 () rs orientation: forward

Symbol	Name	Function Class
A630050E04Rik	RIKEN cDNA A630050E04 gene	1967 bp downstream
Rr559280	regulatory region 559280	1653 bp distal
Rr559281	regulatory region 559281	1073 bp proximal