rs27982116 SNP Detail

Summary

• ID
  rs27982116
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:76386520 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCCAGGTA CAGCTTTTGC
  TTTGCCATTC GTCCTTGCAT GTCCACTGAA AGCGTTGCTC TCTGTGCCCA CCCTGTATCG
  GCCCCTGGGT GTGAGGTCGC AGGTCGCTTA ACTGCTTGGA AGACTTCTTC TGAAGAGTTG
  TGCGATCTAA AACTTGGGTT AATTGTGGTT AATTGGGCTT AAGTACAAAG ACCTTGTAAA
  K
  TAAGAATGAT CCAATCTGGT CACACAGTAG GATTTCCTTT CTCAGCTCTA GCCTTTGAAA
  CATTAAAATG CAGACAGAAA GCCATTTTAA AATCAAAATT GGAAAGCCAG TGAACAGTAA
  TATATGCACA TTTATAGCGT CTCGGGGTTA GAAGGCTCTT TTATGGATGA ACTTTGTCCA
  CAGTTTTATC AAGGCCTTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38105044	NES09262435	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T		T	T	T	T		T
ss320355381	CHEV_2_76394233	CHEVERUD	SCREENING_POP	f	SNP											G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27982116					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38105044	NES09262435	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76386520 () rs orientation: forward

Symbol	Name	Function Class
Osbpl6	oxysterol binding protein-like 6	Intron
Rr559696	regulatory region 559696	72 bp proximal