rs27981110 SNP Detail

Summary

• ID
  rs27981110
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:77645359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAATA TTATGCAAAT GAGATGCTTC
  M
  GGGATGATAC TGCACCACAC TGATA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38099237	NES09249802	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	C	A	A	A	C	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27981110					SNP	A	A	A	C	A	A	A	C	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38099237	NES09249802	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:77645359 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11837	CpG island 11837	854 bp proximal
Rr559844	regulatory region 559844	812 bp proximal
Rr559845	regulatory region 559845	1791 bp proximal
Rr559846	regulatory region 559846	1973 bp proximal
Tssr24865	transcription start site region 24865	1578 bp downstream
Tssr24866	transcription start site region 24866	1665 bp downstream
Tssr24867	transcription start site region 24867	1695 bp downstream
Tssr24868	transcription start site region 24868	1721 bp downstream
Tssr24869	transcription start site region 24869	1743 bp downstream
Tssr24870	transcription start site region 24870	1864 bp downstream
Zfp385b	zinc finger protein 385B	Intron