rs27979331 SNP Detail

Summary

• ID
  rs27979331
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74792976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAGCCCTG GTCACTCTCT
  GAGGCCAGCT GGCAGCTCTT CCCCCATGCC ATCTCTGCAA CAGGAGAAGG CTCAATGAGT
  GGGTGAGAGC ACGGTGGGAA GAAGCGATAA ACTGGGGGTG AGAGGGGGGA GGAGAGGAGG
  AAGGAAGGGG CTAACCTACT CCCCTGCTGT TGTCCAGAGC CTGGTCCATC TGAGCCTCCC
  Y
  ATTACCATTT CCTTGTTCCC TGAGTCTGTC AAGGGCAGAC TTTATAGCTT CCTCTTGCAC
  ACATTAAAGA ATGTTGGCTC TAGAGGTGGA ATATTGAACT TGGAGCTCTG TAAACCTTGC
  AAATTTCAGT CCATAACCGA TTTTCTAATA GCGCACTTAA TCTTCGCTTT TCTTTCACCC
  CCTCCCCAGA TCGATATTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38112256	NES09270109	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27979331					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38112256	NES09270109	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74792976 () rs orientation: forward

Symbol	Name	Function Class
Igs15	intergenic site 15	within coordinates
Rr559413	regulatory region 559413	1636 bp proximal
Rr559414	regulatory region 559414	1902 bp proximal