rs27979330 SNP Detail

Summary

• ID
  rs27979330
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74793301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGTCCAT AACCGATTTT
  CTAATAGCGC ACTTAATCTT CGCTTTTCTT TCACCCCCTC CCCAGATCGA TATTGATCAT
  CAAATGCTTC TGTGTCTCTC AAGAAAGGGT TGAACTTGCT TCTTGCTTGA CCTCACGTGG
  GGGACGGGTT GAGAAGATTT TGTTCTTAGG ATACCACAGA CTAAGCCCTT ACATAAAACG
  K
  CTCTAAATGA GACTGTAGCG AGTATCACCA TCTTCCAACC GGATCCACAC AGAGCTAACC
  CTCCAAAGAC CTGGTCCAGA CCATAACCCT ATGAAGTAGA TTCTGCTAGA ATTATCCTGA
  GACGGAGAAA TAGGGCTGAG GGTGAGCAAA CTGGTTCAGC AAGGTTTAGG AGGGCGGGGA
  TACTTGAATT CTGGTGCGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38112255	NES09270110	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	T	T		G	T	T		T
ss320348838	CHEV_2_74801014	CHEVERUD	SCREENING_POP	f	SNP									G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27979330					SNP	T	T	T	T	G	T	T	T	G	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38112255	NES09270110	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74793301 () rs orientation: forward

Symbol	Name	Function Class
Igs15	intergenic site 15	within coordinates
Rr559413	regulatory region 559413	1311 bp proximal
Rr559414	regulatory region 559414	1577 bp proximal