rs27979325 SNP Detail

Summary

• ID
  rs27979325
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74793825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATACTGCT ATTACTTGTA
  TACAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAAGGG
  GGATACTGCA TGGTGAAGTA TTTGGATTTA AGCTTCAGAC TTCCTGGGTT CAAATTCTGA
  TTCTGTCTCA GTTTATCACT GTGTGATCAA GTGGGAGAGT AGGGGCCCCT GATAAGGCTC
  R
  GAGGACTTAA TATTTTCAGA GTGCCCAGGA CAGTGAGAGA AACCACTGGG ATTTTATGAG
  AGCTTGATTA ATAATTCAAT TAGCTTTCCA AATGTTCCTG AAATGGTAAA GAGTGAAGCC
  TTGTGGGCAG CAAGAGCTAG CTATGCAATA ACCAACCCAG CAAGAAAATC TTTACAAGAA
  AATGAAAAAA AAAAAAACCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38112250	NES09270061	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		G	A	A		A
ss320348848	CHEV_2_74801538	CHEVERUD	SCREENING_POP	f	SNP											G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27979325					SNP	A	A	A	A	A	A	G	A	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38112250	NES09270061	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74793825 () rs orientation: forward

Symbol	Name	Function Class
Gm75057	predicted gene, 75057	1975 bp upstream
Igs15	intergenic site 15	within coordinates
Rr559413	regulatory region 559413	787 bp proximal
Rr559414	regulatory region 559414	1053 bp proximal
Rr559415	regulatory region 559415	1619 bp proximal
Rr559416	regulatory region 559416	1994 bp proximal