rs27979324 SNP Detail

Summary

• ID
  rs27979324
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74793836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACTTGTAT ACAGAGAGAG
  AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAAGGGG GATACTGCAT
  GGTGAAGTAT TTGGATTTAA GCTTCAGACT TCCTGGGTTC AAATTCTGAT TCTGTCTCAG
  TTTATCACTG TGTGATCAAG TGGGAGAGTA GGGGCCCCTG ATAAGGCTCA GAGGACTTAA
  Y
  ATTTTCAGAG TGCCCAGGAC AGTGAGAGAA ACCACTGGGA TTTTATGAGA GCTTGATTAA
  TAATTCAATT AGCTTTCCAA ATGTTCCTGA AATGGTAAAG AGTGAAGCCT TGTGGGCAGC
  AAGAGCTAGC TATGCAATAA CCAACCCAGC AAGAAAATCT TTACAAGAAA ATGAAAAAAA
  AAAAAACCCA ACCTATCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38112249	NES09270062	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		C	T	T		T
ss320348849	CHEV_2_74801549	CHEVERUD	SCREENING_POP	f	SNP											C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27979324					SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38112249	NES09270062	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74793836 () rs orientation: forward

Symbol	Name	Function Class
Gm75057	predicted gene, 75057	1964 bp upstream
Igs15	intergenic site 15	within coordinates
Rr559413	regulatory region 559413	776 bp proximal
Rr559414	regulatory region 559414	1042 bp proximal
Rr559415	regulatory region 559415	1608 bp proximal
Rr559416	regulatory region 559416	1983 bp proximal