rs27979321 SNP Detail

Summary

• ID
  rs27979321
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74794709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCATGCAC ACAGTTGGCT
  CAGGCTTTTA TGAGACGGTC TAAGAATTCC TTGTGCCGTT TCAGCCGGCT GCGAAAGCAG
  GCAAGACCAT CTTTTAACTT TTGTGGGCAT GTATTCAACC TTCTTCACAA ACCTACATTT
  AATTTCATTG ACTTGTCTAT TTTTTCTTCA GATTTTGCTT TTAATCCTTG CCACAAGAGC
  Y
  GCCTCCCATC AAAATGTTCA TTTTCATTAG GGATGGGAGG AAGATTTCTC CGAGGGGAGT
  GTCTGCTTTG AAGGAAGAAG CAGAGGGTTA GAGAATTCAA AATGCCAATT ATGTGTAAGG
  TCGGCTGGTG AGGAGCAACG CTATAAAGGC CACGGAGTTT ACTGCAAAAG GGTGCCCCCT
  GCTGGAGGCT CCTTCAATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38112246	NES09270043	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27979321					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38112246	NES09270043	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74794709 () rs orientation: forward

Symbol	Name	Function Class
Gm75057	predicted gene, 75057	1091 bp upstream
Igs15	intergenic site 15	within coordinates
Rr559413	regulatory region 559413	within coordinates
Rr559414	regulatory region 559414	169 bp proximal
Rr559415	regulatory region 559415	735 bp proximal
Rr559416	regulatory region 559416	1110 bp proximal