rs27979320 SNP Detail

Summary

• ID
  rs27979320
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74795004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCAAAATG CCAATTATGT
  GTAAGGTCGG CTGGTGAGGA GCAACGCTAT AAAGGCCACG GAGTTTACTG CAAAAGGGTG
  CCCCCTGCTG GAGGCTCCTT CAATTGCGTC AGCTCAGCTC AGTTCATAAC CTAAAGCAGC
  TGCCTTTCCC AGTGCCAACT CAGATTCTCT GCAGATGTTT CCTTATGACC CATCCACATG
  Y
  TTGCTAAATA TCATCTGTTA ATTCCCCCCA AACATCCTGG ATCTAGTTCT TTTATGTGTA
  ACTCGACTTA AGGTCTTAAA ATAGATGACA GCAAAAACAT TTAAAAAATA TATCTCACAG
  GTACAATTGT CTTGAATATC ATCAGCACAC TAACTCCGTA GTTGGACTCC AGTCTTAAAG
  GGCATTCCAG CTATTTTACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38112245	NES09270044	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C		T	T	C	T
ss146764217	ENSMUSSNP2224927	ENSEMBL	ENSEMBL_Sanger	f	SNP								T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27979320					SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38112245	NES09270044	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74795004 () rs orientation: forward

Symbol	Name	Function Class
Gm75057	predicted gene, 75057	796 bp upstream
Igs15	intergenic site 15	within coordinates
Rr559413	regulatory region 559413	within coordinates
Rr559414	regulatory region 559414	105 bp distal
Rr559415	regulatory region 559415	440 bp proximal
Rr559416	regulatory region 559416	815 bp proximal