rs27979317 SNP Detail

Summary

• ID
  rs27979317
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74796060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGTT TCATCAGAGC AGCTGCAAGC
  M
  ATCGGCTCCT GACTCAGTGC CTTTC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38112242	NES09270017	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	C	C	A	A		C	A	A		C
ss146764235	ENSMUSSNP1157667	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						C
ss320348864	CHEV_2_74803773	CHEVERUD	SCREENING_POP	f	SNP											A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27979317					SNP	A	A	A	A	A	C	C	C	A	A	A	C	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38112242	NES09270017	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74796060 () rs orientation: forward

Symbol	Name	Function Class
Gm75057	predicted gene, 75057	within coordinates
Igs15	intergenic site 15	within coordinates
Rr559413	regulatory region 559413	905 bp distal
Rr559414	regulatory region 559414	1161 bp distal
Rr559415	regulatory region 559415	242 bp distal
Rr559416	regulatory region 559416	within coordinates