rs27979314 SNP Detail

Summary

• ID
  rs27979314
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74796199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGTCTGCC GAAGACAAGC
  AGCCTCTGAT TACAGGATGT TTCATCAGAG CAGCTGCAAG CCATCGGCTC CTGACTCAGT
  GCCTTTCTGA GGGTCCACCC TAAGGAACTT CCCAGGACGC ACTTACTGAA CTTGACTGGG
  AAGGCTAGAC TACTGTCAGA GTTCTTTTAA AGGGGAAGGT AGACCAAAAC GCCATTGTGT
  K
  TTTTCGAAAA AACCTTCCTC CGTTGGGCTA GGCAGGCGCT TTCCTCAGCC CGGCACTGTC
  ACCTTCGGGA AATCAGCCGA AATCTGCGGA CGGGGTGGGG TGGGGGCATC CCACAAGTAC
  TACATAAGAA ACTCTAGGTA GGACCAACTC ACTGGTGTTT TGGCAAACTT TCTGGGTTTT
  TTTGATGCAC ACCAAAGTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38112239	NES09270022	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27979314					SNP	T	T	T	T	G	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38112239	NES09270022	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74796199 () rs orientation: forward

Symbol	Name	Function Class
Gm75057	predicted gene, 75057	within coordinates
Igs15	intergenic site 15	within coordinates
Rr559413	regulatory region 559413	1044 bp distal
Rr559414	regulatory region 559414	1300 bp distal
Rr559415	regulatory region 559415	381 bp distal
Rr559416	regulatory region 559416	within coordinates