rs27979313 SNP Detail

Summary

• ID
  rs27979313
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74796251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCAAGCC ATCGGCTCCT
  GACTCAGTGC CTTTCTGAGG GTCCACCCTA AGGAACTTCC CAGGACGCAC TTACTGAACT
  TGACTGGGAA GGCTAGACTA CTGTCAGAGT TCTTTTAAAG GGGAAGGTAG ACCAAAACGC
  CATTGTGTTT TTTCGAAAAA ACCTTCCTCC GTTGGGCTAG GCAGGCGCTT TCCTCAGCCC
  R
  GCACTGTCAC CTTCGGGAAA TCAGCCGAAA TCTGCGGACG GGGTGGGGTG GGGGCATCCC
  ACAAGTACTA CATAAGAAAC TCTAGGTAGG ACCAACTCAC TGGTGTTTTG GCAAACTTTC
  TGGGTTTTTT TGATGCACAC CAAAGTCTGA GAATCACAAA AGTGATGAGA AATCTGTAAT
  TTAGTTTTAC TAGGACACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38112238	NES09270023	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27979313					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38112238	NES09270023	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74796251 () rs orientation: forward

Symbol	Name	Function Class
Gm75057	predicted gene, 75057	within coordinates
Igs15	intergenic site 15	within coordinates
Rr559413	regulatory region 559413	1096 bp distal
Rr559414	regulatory region 559414	1352 bp distal
Rr559415	regulatory region 559415	433 bp distal
Rr559416	regulatory region 559416	within coordinates