rs27978740 SNP Detail

Summary

• ID
  rs27978740
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75926410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCATAATGA ATTCAAAACT GTCTGCTGTC ATTAGCTCAC
  TCAATCCTCA CACAACTTGG TGGTGGCGGT GGCTGTTGTG GTGGTGGGTG TCCATCTTGT
  Y
  GCACGTTAAT GACTATGTAG TTGTAAAGGA ACTATCATGT TTTCCCGATC ACATGGTACA
  TGTGGATGAG CTGTTCTTCA TCTTTGCAGA GCCCAGCAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38107271	NES09256765	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	T	T		C	T	C		C	T	T	C		T
ss45347091	mCV23800021	ABI	CRAMUS_MOUSE	f	SNP		T	T					C		T
ss146770208	ENSMUSSNP6285829	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T
ss320352645	CHEV_2_75934123	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27978740					SNP	T	T	T	C	T	T	T	C	C	T	C	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38107271	NES09256765	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75926410 () rs orientation: forward

Symbol	Name	Function Class
Pde11a	phosphodiesterase 11A	Intron
Rr559647	regulatory region 559647	1411 bp proximal
Rr559648	regulatory region 559648	1795 bp proximal