rs27978727 SNP Detail

Summary

• ID
  rs27978727
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75927308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATTTTACT GAGCAACTAT
  TACAGGTCAG GCACCTCGTC GGGGACTGGG GAGATGCAGT TGCAGAGCTC AGAGTCTGGT
  GCAGAGGGAT TCCACTCTGC CACCATCATT CATACCCTTC AGAAGGACAG GGCAACATTA
  ACTGCTTGAT GTGTGTCTAC AGAATCAACA CGTAACAGCA TCCTATCTAA CGTTAGTATG
  Y
  TGTTCGGTGC TAATTATAAT TATTGTTAGT TTGGGTTAGT TTCCCATCTG ACTAACTCTC
  TGGAAAAGCA GACAGTACTT TTGACCCATT TGGCTGCTTG TAGCCCCCGA GAGCAAGTTG
  GACAGCTCAA CCAGTTTGTA AGGAGTAAGC TGTCTCGTCA CTCTGTCCAC TGTGCTGTGC
  TCCACTCTCC TTGACCAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38107258	NES09256684	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27978727					SNP	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38107258	NES09256684	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75927308 () rs orientation: forward

Symbol	Name	Function Class
Pde11a	phosphodiesterase 11A	Intron
Rr559647	regulatory region 559647	513 bp proximal
Rr559648	regulatory region 559648	897 bp proximal