rs27978697 SNP Detail

Summary

• ID
  rs27978697
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75930191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAAACAAA CATTCCTGCA
  GTGTTTAAAA GGCAGGGACA CGTTTAAGAC CCCTTTTTCT CTTTCTTTCC TTTTTTAAAA
  AATTGTAGCA ACATGATCAC GGAACACACC CCTCCCACTC CAGTCTCCTT CTTTTCTGAA
  TTTTTAGTTT TTCTAGTTGG GGGTGAAGGG AAGAGTACAA AGCGTTCTTC AAAGGCAGCC
  Y
  CAGCGTTTTG CGGAGCTGTC TGACAAGCTT GAGCCCTGCT GGGTGGGCGG CCAGCTGCTC
  CTGCAGGAGC CATCCCAGAG CTAGATGTTC CCAGAACCCT CTCTGTCAGT GGAAAGGGCA
  GAGGTGAATT ATGATATATG TTGGGAAACG TGCCCAGTAG CAGGGGGAAT GGGATTAATC
  AGCTCCAGAA TTGTTTGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38107228	NES09256714	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27978697					SNP	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38107228	NES09256714	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75930191 () rs orientation: forward

Symbol	Name	Function Class
Pde11a	phosphodiesterase 11A	Intron
Rr559648	regulatory region 559648	973 bp distal
Rr559649	regulatory region 559649	within coordinates