rs27978689 SNP Detail

Summary

• ID
  rs27978689
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75931188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATCACGTG GAGTGAACTG
  AATATACACA GGGAGAGAAG AGGACTTCAG CAGCACAAAC CGAGTCCCCT CCCCGCCCCC
  CTCAATGACA GCGTGGTCCT TCCGGGACTT GCCCAATACA GCAGCGGAGT TTAGCCACCA
  ATAGCTCCTT CAGAGCCTTG CTGCTACCAC CCAACAGAGC AAGATCTGTA AAAGCATATG
  W
  ATCAGCAGAA ATGCTGGGTT GTAGCGGAGT TACTCTCCGA GAGGAGCAAT ATGTGGAAGA
  TGCAGTGATT GGCACCGTGC TGTTCTCTAG GAAGGAGAGG AAATGCATTT GTAAAGTCTG
  GCTGCCTGAC ACTGCCTAAC CAAATAGCTG GGCTCCACAC TCTTATCCCT GGATAGGTTG
  AGAATGTTTG ATGTTTTAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38107220	NES09256641	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27978689					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38107220	NES09256641	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75931188 () rs orientation: forward

Symbol	Name	Function Class
Pde11a	phosphodiesterase 11A	Intron
Rr559648	regulatory region 559648	1970 bp distal
Rr559649	regulatory region 559649	404 bp distal
Rr559650	regulatory region 559650	1047 bp proximal