rs27978427 SNP Detail

Summary

• ID
  rs27978427
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75511306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCTGGCT GTCCTGACAC
  TCACTCTGCA GACCAGGCTG GCCTTGAACT CAGAAATCCG CCTGCCTCTG CCTCCCAAGT
  GCTGGGATTA AAGGCGTGCG CCACCACTGC TCTGCTTGTC TTTGTATTTT AAGGGAGTTG
  AGACATCCAT AAATTAGAGC ATGGAGTTTA GGTGGTAGCT GAAATGTGGA GAGCGGTGAG
  Y
  ACCTCCTTGT GCTGTATATT AGTCACAGGC CCATTCAGTC ACCAACAGTT TCCTAGGATG
  ACTTTCCCTC AATGCACATC CTAAACCATC CCAGTCTGTC TTTGTTTTTC GTTTCCTGTA
  ACATGATCAG AAAAGAACAC CTTGGGGGAT CCTTATCAAG GCCCAGGAAG GCTCAGCTCA
  CCTGGAACAG CTCTGAGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38109259	NES09262772	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27978427					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38109259	NES09262772	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75511306 () rs orientation: forward

Symbol	Name	Function Class
Igs15	intergenic site 15	within coordinates
Nfe2l2	nuclear factor, erythroid derived 2, like 2	Intron
Rr367218	regulatory region 367218	1338 bp upstream
Rr559542	regulatory region 559542	381 bp proximal
Rr559543	regulatory region 559543	1222 bp proximal
Rr559544	regulatory region 559544	1510 bp proximal
Rr559545	regulatory region 559545	1714 bp proximal
Rr559546	regulatory region 559546	1800 bp proximal
Tssr24650	transcription start site region 24650	1557 bp upstream
Tssr24651	transcription start site region 24651	1530 bp upstream