rs27978424 SNP Detail

Summary

• ID
  rs27978424
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75511764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTACACTTA ATTGTTCATG
  GGTTGCTGGT CACAAACTTA TTATGTGCCA AAAAGATAGC CTTGACTCCT ATCTTCTTGC
  CTGCATCTCC CCAGTGCTGG GATTACAGGC ATATGCCACC CATACCTGGC TGTCATCTAA
  TTGTTCCAGT GGGCCAGGGA CATCCAGTGT GATCCCTGTC TGGCACCCAC ACAGGCTTCA
  Y
  AGAGTCCGGG AAGTTCTCTG CACTTTCAGA GCTGTGCTAT AAAGCGTGCA AAAGAAAAAG
  AAAACTGCTT TTTAAAACCT AGCTGGTGAA AGGTTCAGCA GTGAAGACCA TGCACTGCCC
  GGAGGACCTG GCACCCACGT GACGCTGCTC ACAACTGCCT GGAACTCCAG CTCTAGGAAA
  TCTGACACCT CTAGCTTCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38109256	NES09262763	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27978424					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38109256	NES09262763	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75511764 () rs orientation: forward

Symbol	Name	Function Class
Igs15	intergenic site 15	within coordinates
Nfe2l2	nuclear factor, erythroid derived 2, like 2	Intron
Rr367218	regulatory region 367218	880 bp upstream
Rr559542	regulatory region 559542	within coordinates
Rr559543	regulatory region 559543	764 bp proximal
Rr559544	regulatory region 559544	1052 bp proximal
Rr559545	regulatory region 559545	1256 bp proximal
Rr559546	regulatory region 559546	1342 bp proximal
Tssr18460	transcription start site region 18460	1779 bp upstream
Tssr24651	transcription start site region 24651	1988 bp upstream